《Table 3–Candidate genes in the genomic region of SNP most highly associated with RGR-Salt in cotton

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《Genome-wide association mapping of stress-tolerance traits in cotton》

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For the RGR-Salt trait，two SNPs（i02237Gh，i02243Gh）on D01 could represent stable genetic loci responsible for salt resistance in cotton.There were 49 SNPs located in this candidate gene interval.The physical locations of the sequences containing these SNPs were mapped to the TM-1genome sequence[43]，and i02237Gh and i02243Gh were associated with the same candidate gene region（D01，37771–1942912）.A total of 223 genes were found in this region.Homology analysis and GO（Gene Ontology）biological process analysis showed that 10 genes（Gh＿D01G0008，Gh＿D01G0018，Gh＿D01G0027，Gh＿D01G0057，Gh＿D01G0081，Gh＿D01G0167，Gh＿D01G0180，Gh＿D01G0181，Gh＿D01G0197，Gh＿D01G0202）were involved in stress response，seed germination，or dormancy（Table 3）.