《Table 1 KEGG pathway analysis for Squaliobarbus curriculus transcripts》

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《Transcriptome characterization and SSR discovery in Squaliobarbus curriculus》

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KEGG pathway analysis was performed on all transcripts for functional categorization and annotation.Ko numbers were assigned to 44 781（21.95%）transcripts，which categorized them into diff erent functional groups（Table 1）.Of all these annotated transcripts，12 619（28.2%）were classifi ed into the metabolism，including majority subgroups of carbohydrate metabolism（3 190），lipid metabolism（2 264），amino acid metabolism（2 564）and other eight subgroups.Transcripts assigned into the genetic information processing were 7 012，including transcription（1 074），translation（1 968），folding，sorting and degradation（3 167），and replication and repair（803）.Environmental information processing accounted for 13 229（29.5%），consisting of membrane transport（185），signal transduction（10 291），signaling molecules and interaction（2 753）.Cellular processes，organismal systems，human diseases contained12 332（27.5%），10 075（22.5%），and 2 566（5.7%）transcripts，respectively.In addition，all the 44 781transcripts were mapped into 230 cellular metabolic or signaling pathways and the three biggest clusters were endocytosis（2 259），ubiquitin-mediated proteolysis（1 744），and the MAPK signaling pathway（1 719）（Additional fi le 4） .